An online platform for reproducible neuroscience.





How does it work?

Projects

Projects allow you to manage data, processing and results. Share Projects privately with collaborators or publicly with the brainlife.io community.

Brainlife.io maps data files to registered Datatypes, allowing Apps to interoperate.

Data can be uploaded using a web browser or the Brainlife CLI for bulk upload compatible with the BIDS standard.

Apps

See Apps for publicly registered brainlife.io Apps. Use Process page to store stage input datasets and data derivatives generated by running the Apps.

Brainlife Apps are small, modular and composable. This allows users to experiment flexibly by buidling personalized pipelines one step at a time.

Bulk Processing

Our unique analyses management mechanism (pipeline) allows easy submission and monitoring of thousands of processes.

Brainlife.io processes each subject independently. This leads to high scalability, and makes Brainlife.io Big Data ready.

Data Visualization

Each datatype provides a set of visualization tools. We support both web based and native visualizers, such as fsleyes, freeview, that are streamed directly from our GPU enabled VMs.

If you are a developer of a visualization tool, brainlife.io can bring your tool alive by allowing users to launch it on any dataset hosted on the platform.

Data Provenance

Brainlife.io keeps track of the history of each dataset. It preserves input and output data files, Apps version and configuration parameters as well as the computer resource used to generate the dataset.

You can count on brainlife.io to make sure your scientific results are reproducible.

Publications

You can automatically create a single record preserving Apps and Data referenced by a unique DOI.

Brainlife.io publications are archived securely on a geographically-redundant tape system for long term preservation.



Brainlife is for everyone!

Brainlife reaches out beyond neuroscience experts. We've made sure that our UI and Apps can be used by non-neuroscentists by providing detailed information about each App with good default parameters that should work across a wide range of input datasets.


Students

Students can quickly get started and learn about key concepts of brainimage data analysis. Brainlife can lower technical barriers that often impede an effective learning process.


Computer Scientists

Computer scientists and engineers can focus on developing new algorithms and new computing methods without having to learn the entire neuroimaging preprocessing steps.


Data Scientists

Statisticians and data scientists can use available datasets and data derivatives to gather new insights into individuality and variability in human populations.



       GET STARTED           Read Documentation   

Mission

Neuroscience is engaging at the forefront of science by dissolving disciplinary boundaries and promoting transdisciplinary research. This process can facilitate discovery by convergent efforts from theoretical, experimental and cognitive neuroscience, as well as computer science and engineering.

To assure the success of this process, the current lack of established mechanisms to promote open sharing data, software and scientific results must be overcome. Promoting open software and data sharing has become paramount to addressing the problem of scientific reproducibility.

We address challenges to neuroscience open sharing and reproducibility by providing integrative mechanisms for publishing data, and algorithms while embedding them with computing resources to impact multiple scientific communities.

   .. seamless public access to data, computing, and reproducible algorithms, while promoting code sharing and upcycling the long tail of neuroscience data. - NSF BCS-1734853

A global multidisciplinary collaboration


Sixty-six collaborators from global scientific communities contribute to the project by providing data, applications, technology and products to advance understanding the human brain.


Partners and collaborators

Beijing Normal University • Boston University • Fondazione Bruno Kessler • Harvard Medical School • Illinois Institute of Technology • Indiana University Bloomington • Indiana University School of Medicine • Indiana University-Purdue University Indianapolis • Indiana Unversity Bloomington • Italian Institute of Technology • Massachusetts Institute of Technology • National Institute of Information and Communication Technology • Northwestern University • Stanford University • The Jikei University School of Medicine • The Rockefeller University • The University of Washington • University Medical Center Groningen • University of Michigan • University of Oxford

Research areas and applications

Cognitive Neuroscience and Learning • Systems Neuroscience • Medical Sciences • Database for neuroimaging data management • Neuroinformatics • Neuroradiology • Biomedical Engineering • Scientific community tools • Information technology • Network neuroscience • Cognitive neuroscience of language • Statistics • Aging & social cognition research • Brain development • Psychological and brain sciences • Vision science and sports concussion research • Informatics and computing • Electrical engineering • Optometry • Computer science • Clinical neuroscience • Neuroimaging and radiology • Alzheimer disease and aging research • Rodent models • Computer Science • Computational neuroanatomy • Decision making and Neuroeconomics • Traumatic brain imaging • Visual brain development • Visual neuroscience and development • Ophthalmology • Systems neuroscience • Data Science • Big data and statistics • Clinical visual neurosciences

   The Brainlife platform is phenomenal. A great idea, great execution. It reminds me of Wikipedia when it started… now it is essential to almost everyone. - Tatiana Wolfe, The Ohio State University.




Brainlife Team



Franco Pestilli
Project Director
Lindsey Kitchell
Graduate Student
Brent McPherson
Graduate Student
Bradley Caron
Graduate Student
 
Dan Bullock
Graduate Student
Soichi Hayashi
Lead Developer
Sophia Vinci-Booher
Postdoctoral Researcher
Josiah Leong
Postdoctoral Researcher
 


Key collaborators



Robert Henschel

Director of Science Community Tools at Research Technologies, Indiana University

Eleftherios Garyfallidis

Assistant Professor of Intelligent Systems Engineering, Indiana University

Lei Wang

Assistant Professor of Psychiatry and Behavioral Sciences and Radiology, Northwestern University

Ivo Dinov

Associate Director for Education and Training, Michigan Institute for Data Science, University of Michigan